hi Daro. Thanks for the list - it does help clarify to some degree. I'll start by simply answering the individual items as though that item is the only concern. because you've made many changes in an attempt to correct the problems a final solution still can't be determined.....yet!
The problems:
1- hesitation and stumbling off idle
Typically: pilot(idle jets) that have deteriorated or been physically damaged from surface crystallization, deformation from improperly fitting driver, cleaned with "tip" cleaners or drill. Must be replaced
2- lean cruise mixture
Raising main needles generally will cure this.
3- rich wide open throttle
Normally, lowering the needle but this contradicts #2 ?????
4- starting difficulties and rough idle (missing out)
Choke Air Mod deals with hard start. Rough idle ? Replace Pilot-jets and Pilot-needles. re-sync (average should be 7.5 "hg to 8" hg) stock engine
5- excessive heating of the engine
Water pump and/or rad. issues ? Install "cooler" thermostat.
Steps taken to tackle the problems and how it contribute to resolve the problems listed: scale 1-5 (where1 is weakest)
1- cleaning the carbs beyond imaginable (boiling, flushing, blowing, ultrasonic etc.) 3
Agree, they should be clean by now.
2- replacing butterfly valve shaft seals 2
This raises a big red flag ! I'm not an advocate of removing the butterfly's. The slightest disparity/misalignment in replacing them could be part of your problem.
3- setting fuel level in carburetors to various heights, also far beyond the recommended spec 2
6.5mm to 8.5mm should be maintained if for no other reason then to have a known constant factor. Some of your problems could be fuel level too high and conversely, some could be related to too low a fuel level.
4- re-jetting the idle and main circuit and changing the needle height 3
You should be able to get enough idle fuel by increasing the pilot-needles more turns out. Nothing you can do with the three transition ports but they should accommodate the bore increase. Raising the main-needle one notch should have accounted for the bore kit requiring more top end fuel.
5- adding weights to vacuum slide to change rise height to vacuum ratio 1
No idea ! Remove the weights to return to a "Norm".
6- install of the lambda measurement device to see it while riding 5
remove it ! Too much concern about this and frankly I think it's confusing - especially with so many radical changes to the systems.
7- constructing entire new ignition system to provide "better" spark 4
no issues here, as a rule.
8- installment of the camera inside the air-box to visually inspect the problem "inside" of the carbs 4
Cool video !
9- using different filter configurations to restrict or improve the air flow 3
Remove the air filter(s) until you start seeing progress and improve. An open free breathing intake will provide a constant.
10- changing the timing on the intake and exhaust camshafts 5
Kawboy addressed this but my two cents is retime them to the manual, otherwise you're compounding and/or masking other issues.
Also i have made various changes on three different carburetor sets to verify the problems on different part configuration.
Again; 3 carb sets (?) all set-up differently? I applaud your resolve but with each set you have probably made changes elsewhere (with no success) and unless you return your changes to exactly what they were - you're lost in a maze.
Clearly you're motivated to resolve the problems and seem capable but perhaps your enthusiasm has taken advantage of you.
Some of us here share the philosophy that when tackling a problem it's best to make 1 change at a time - compare the results - note EXACTLY what was done if there's some improvement and then move on. NO results - refer to your notes and go back to the start (exactly) and try something different......and .....repeat.
Personally, at this point I'd feel compelled to undo everything and go back to the manual's specs, and start over. Sounds counterproductive but at this point I would feel like I had no choice - especially if I got caught in the trap of "too many adjustments - all at once" and truly not knowing where I was in the grand scheme.!
And to all those out there with running big bore kits who have not bothered to add anything.......Thanks for all your help, input and ideas !!!!!
Sarcasm completely intended and aimed !!!