Incorrect cam timing will make the pistons hit the valves bending them, this will make them stay open, they may not look really bent, and they seem to move ok, but they don't seat properly, but believe me it can happen, I had a failure of the tensioner and a cam chain jumped a few teeth, bike was only idling at the time, it didn't sound nice, anywho after replacing the valves, chain and the tensioner all is well. The holder for the shim that covers the valve spring is a "bucket" , well that's what I call it, hope it's not valves bent, but worst case it could be.